rs30054030 SNP Detail

Summary

• ID
  rs30054030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141307990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATGAAA TATCAGAGAA
  ATAATTTTAT TGTTGAGGTC ACCACAACAT GGGGAACTAT ATTAAATGTT CTGCAGTATC
  AGAAAAGTTG AGAACCACTG CTCTAGAGAA CCAGCCATGG TATCTGCCAC AGAGAGATAG
  TAATGCCCAC TTAACAGACT GGAGCATAGA TATAAGACTA TAATACATAG GGAAGGTACT
  R
  TAGTAACAGT GCATCAAGAA TCCCATGACT TTATATTGTT ATTATCATTT TGTCACTTAC
  AGGGGCCATC TTATGCTTTT AAGAGAGAAG AGCCTTGAGC TTGGAGATGG GTCCAAAAAG
  TATTCTAGTT GTCACCCCAG CTGGAAGGCT TTCCTTGTTG CCTGACAAAA TTTAGAAGCC
  GGAAGTAATC AAAACCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45389256	mCV25334053	ABI	CRAMUS_MOUSE	f	SNP		G						A		A
ss61091952	NES16600211	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G		A	A	A	G		A	A		A
ss136005513	ENSMUSSNP2365878	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
ss320993703	CHEV_3_141265193	CHEVERUD	SCREENING_POP	f	SNP													A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30054030					SNP	G	G	G	A	G	G	G	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091952	NES16600211	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141307990 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586341	regulatory region 586341			583 bp distal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant