rs30053959 SNP Detail

Summary

• ID
  rs30053959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50647059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTAAAA TTACTTTTGA
  AAAATACAGT AAATAATTAA AAGACAGTGA TATGTATTGT ACCCAAAGTT TACCACAACT
  GCTGACTCAG CATGTCACCC TGGTTCTGCA AGTTGAAAGA AAGCTGTTTC AAACTACTTT
  TCTTGTACCC AGAGAGAGAA AAGGAATTCT AGGAAATATG AGTGTGGAAG GCTTATGGTA
  W
  ACCGTCCAAC TCCTCTTGCT TACATCTCTA TATTAGAACT ATGGGTTAAA TTATAAAACC
  AAGATTTAAT TCAATCCTAT CTGTCAATTG CAAGAACCCA ACCCCCATTG TATATGACGA
  ATAGTAACTC CAGGACCAAT TTGGCTTTTC CAAAGTAGCC ATTAAGGGCA GTCATTCGGC
  TTCTCATTCT CTTTCCTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49595735	NES12915334	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30053959					SNP	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595735	NES12915334	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50647059 () rs orientation: forward

Symbol	Name	Function Class
Rr576169	regulatory region 576169	1865 bp proximal