rs30053956 SNP Detail

Summary

• ID
  rs30053956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50648196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCCAAA CATCACATAA
  TAGCAGAAAC TTTGCTGATG GCCAAATCAC ATTAGGCAAA TCATAGTCAG CTGCTGTGGA
  CAATCTGAAG CAGCCCACTA TCCCACACCT GGAGTTAAAA CAAAAATATA TCCTTATAAA
  TGTCAATACT TTTTAAAGAA ACCAAACTTC CAAAATTGTC ACTGCAAGTT GATATGTCAA
  Y
  GAACGATATC TTCACTTATT GGCTCTTCCA GAGTCTCTGA GAAGATCGGT CTTTGCACAC
  TGCATCATGT CTCCTGGAAG CTATTTACCT ACTAGAAGGG CACTATAGGA GTTAGAAATG
  TACTTCAAAC CCTGGCCCTG CCATTCATTT CCTGTGTGGC CTCTCCATGC CTTGACTGTT
  TCATGTCACT GGAAGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49595732	NES12915324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30053956					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595732	NES12915324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50648196 () rs orientation: forward

Symbol	Name	Function Class
Rr576169	regulatory region 576169	728 bp proximal