rs30053890 SNP Detail

Summary

• ID
  rs30053890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50214857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATATAAAT CATTCTGCTG CATGATAAAT GTGCCACAGA
  ACATTAGGTC CCATGTCCAG GGAGGGAAAC AAATAGCCTC AGAAGGGTTC CGTGCTCTTA
  W
  AACTTAGAGC AAGCAGTGAA AGCTGGATGT CCTAATCTAG TTCTTTTTAT CTTTCCAATA
  TAAGTAAAGT TTGCCTGCTT CCTCTGAACA CACTAACTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45440622	mCV22601617	ABI	CRAMUS_MOUSE	f	SNP		T							A
ss49594608	NES12921264	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	T	T	T	A	T	T	T	A	T	T	T
ss135155829	ENSMUSSNP1803668	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30053890					SNP	T	T	T	A	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49594608	NES12921264	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50214857 () rs orientation: forward

Symbol	Name	Function Class
Rr576141	regulatory region 576141	1730 bp proximal