rs30053749 SNP Detail

Summary

• ID
  rs30053749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79793584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC GTAAACTGGT TTGTCTGCTC
  Y
  CTGTGCGCCC CACGAGTGTG TAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45390001	mCV23428351	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135376946	ENSMUSSNP303728	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320812430	CHEV_3_79690199	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30053749					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79793584 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			within coordinates
Gask1b	golgi associated kinase 1B			Coding-Synonymous
				Intron
Gm36569	predicted gene, 36569			within coordinates
Rr375226	regulatory region 375226			within coordinates
Rr578605	regulatory region 578605			1018 bp distal
Rr578606	regulatory region 578606			337 bp distal
Rr578607	regulatory region 578607			77 bp proximal
Rr578608	regulatory region 578608			526 bp proximal
Rr578609	regulatory region 578609			575 bp proximal
Rr578610	regulatory region 578610			615 bp proximal
Rr578611	regulatory region 578611			1684 bp proximal
Tssr29596	transcription start site region 29596			1706 bp downstream
Tssr29597	transcription start site region 29597			1685 bp downstream
Tssr29598	transcription start site region 29598			1187 bp downstream
Tssr29599	transcription start site region 29599			1158 bp downstream
Tssr29600	transcription start site region 29600			1109 bp downstream
Tssr29601	transcription start site region 29601			1080 bp downstream
Tssr29602	transcription start site region 29602			275 bp downstream
Tssr29603	transcription start site region 29603			213 bp downstream
Tssr29604	transcription start site region 29604			156 bp downstream
Tssr29605	transcription start site region 29605			68 bp downstream
Tssr29606	transcription start site region 29606			50 bp downstream
Tssr29607	transcription start site region 29607			607 bp upstream
Tssr29608	transcription start site region 29608			625 bp upstream
Tssr33752	transcription start site region 33752			104 bp upstream
Tssr33753	transcription start site region 33753			39 bp upstream
Tssr33754	transcription start site region 33754			519 bp downstream