rs30053501 SNP Detail

Summary

• ID
  rs30053501
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131790367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGA TTAAAGTGTA ATGTGTATAT
  S
  GGGTTGGGCG AGGGATGAGG AAAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45389327	mCV23619677	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss135908759	ENSMUSSNP1816925	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320968637	CHEV_3_131747570	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30053501					SNP	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131790367 () rs orientation: forward

Symbol	Name	Function Class
Dkk2	dickkopf WNT signaling pathway inhibitor 2	686 bp upstream
Rr585410	regulatory region 585410	546 bp distal
Rr585411	regulatory region 585411	360 bp distal
Rr585412	regulatory region 585412	196 bp proximal
Rr585413	regulatory region 585413	697 bp proximal
Tssr31747	transcription start site region 31747	675 bp upstream
Tssr31748	transcription start site region 31748	844 bp upstream
Tssr31749	transcription start site region 31749	1173 bp upstream