rs30053496 SNP Detail

Summary

• ID
  rs30053496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79381981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT GAGCACATGT CTAGTACGTG
  R
  GAAGGAGGGA AAGAGGGGGA CAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45389320	mCV24555324	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		A
ss47030778	NES10777879	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A		G	A	G		G
ss135372191	ENSMUSSNP1809615	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320811430	CHEV_3_79278596	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30053496					SNP	G	G	A	A	A	A	A	G	G	A	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030778	NES10777879	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79381981 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578523	regulatory region 578523	1965 bp distal
Rr578524	regulatory region 578524	1 bp proximal
Rr578525	regulatory region 578525	1358 bp proximal