rs30053209 SNP Detail

Summary

• ID
  rs30053209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50649213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGACAAC TCTTTTAAGA
  TCACACACCT ATGGCTGCTT TCCACAGCCC CGCTTCAGTT TGTCTGCCAC TTCTCATGCA
  GAGTCACTGG GAACTGGGCC ATGTTCCGTT ATCCATTTCA GCTTTGTAAA AAGGAAGTGA
  GAGATCAGGA TCGTTAGATT CTATAAACAC TTGAATGCCT GGGAAATGCA AAACCATGCG
  Y
  CAGGCTGCTG GCTACAAGCA GCAGAGTGGG GAGGAAGGAA ATTACATCTT AAACGCCAAC
  GCACTATTCT TACAGAGATG CCTAAAGAGA AGGGAATTCA AGTTGAGCAT TTGAATGTTA
  AAACCAAATA GACAATGAGA TGCTCTCCCA GAAAAATAGC TGCCAGATAT GTGTTCTCCT
  GAATGGAAAA GGGAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49595725	NES12915312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30053209					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595725	NES12915312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50649213 () rs orientation: forward

Symbol	Name	Function Class
Rr576169	regulatory region 576169	within coordinates