rs30053208 SNP Detail

Summary

• ID
  rs30053208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50649723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGATTTA CAATGAGGGA
  GAGAGGAAAG AGTCGGAGCT CAACTTCACA CTCTATGATT CCCTGACATA ATATTTCCTC
  CTCGGATTCC AGCAATTCCA AGTAGTCAAT TCAGTGCTAT GCAATTCTGA AAATTATCCA
  CAAGGCCAAA ATCTATTGCG GGAGCATGCA AACTCCCAGG TCCAAAGCTG GGAACATTAT
  Y
  GTCATTTTTT TCTTTCCTTC AGCTGCTCCA CGGCTTTAAG ACAAACGAAC GGAAAGCCAC
  AGAGCTTTTA AGATGTGGGC TGCATTGTTC TTTTCTCCTG TGGTATAGGT AACCTTTCCC
  TGCCTGCATG AAGATGCAGA GGTCTATTCC ATATACTTTT TTGTTACTTT GCTGCTTGTT
  GGTGAAACGA ATTGCTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49595724	NES12915313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30053208					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595724	NES12915313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50649723 () rs orientation: forward

Symbol	Name	Function Class
Rr576169	regulatory region 576169	within coordinates