rs30052309 SNP Detail

Summary

• ID
  rs30052309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50216192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTATAC ACATATGCAC
  TCACACCAAG AAATCACTAC TTACGAAATA ATTAGAGTTA AATAAGAAAC GGTTTGCATT
  TAAAATTTAA AGTACATATG CAAATCCTAT GGTTTCCATC TTAGATGCCA GCAACTACAT
  AAAACCTTTA TTAAATGTTC TAAAAATAAA CCTTAATAAG TCAACAGAAA AAAACAGTTC
  Y
  CTGCTAATAA AAGCTTGGCA AAATGTTGCC AAAAGTAACA TCAATGTAAT TTTTATGTAA
  TTAATATAGC TTCCAAGTTA TAAAGGAAAA AGAAGGTTCT GTTTGTGTCT GAAACTTACA
  GATACCCATT AACACTAGAG TGTCACTCTC CTGTATATAG GAATGGCAAG ATCTCAAGCA
  GGAAAGTGGC TGAATTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49594585	NES12921149	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30052309					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49594585	NES12921149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50216192 () rs orientation: forward

Symbol	Name	Function Class
Rr576141	regulatory region 576141	395 bp proximal
Rr576142	regulatory region 576142	1166 bp proximal