rs30052162 SNP Detail

Summary

• ID
  rs30052162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126069216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATCAGG AATTCATCAA
  ACCATGACTG CTTTTGAAAG CATAATACGT GTGCTACTTC CTCCAAGAGA TTATTATTGC
  TCTACTCTTG TGTACATCTT TAATCCCAGT ACTCAGAAAA CAAAGAAAGA CAAATCTCTG
  AGTTCAAGAT CAGTCTGGTG TACATAACAA GTTCCAGGCT ACCTAGGGCT AACTACATAG
  Y
  AATACCATGT CTCAAAAGTA ATACATAAGT AAGTAAATAA GTAAGTAAAA TGTGTCTGAC
  CTTAAATCCT AGCTCCACAA AAATTTAACT GTGACTTTGA AGTCATTGCT TAATCTCGCT
  GTGCTTCAGG TTCTTTGAAT GTAAAAAATT AATAATGGTA CCATCTCACA GACTAAATGT
  GATCAAGGAA GCAAGCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45389617	mCV23909553	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135827542	ENSMUSSNP353192	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320943737	CHEV_3_125978485	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30052162					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126069216 () rs orientation: forward

Symbol	Name	Function Class
Rr584628	regulatory region 584628	558 bp proximal