rs30051991 SNP Detail

Summary

• ID
  rs30051991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38537836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG CAGAAAAGCC ATCCATTACG
  Y
  TAAGTGGCAC CAGAGAGATT GCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45389138	mCV22716823	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss134837201	ENSMUSSNP6407354	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320719952	CHEV_3_38382609	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30051991					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38537836 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd50	ankyrin repeat domain 50			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13104	CpG island 13104			608 bp proximal
Gm65619	predicted gene, 65619			1418 bp upstream
Rr397648	regulatory region 397648			1062 bp upstream
Rr575675	regulatory region 575675			538 bp proximal
Rr575676	regulatory region 575676			1147 bp proximal
Rr575677	regulatory region 575677			1429 bp proximal
Tssr28929	transcription start site region 28929			1508 bp upstream
Tssr33057	transcription start site region 33057			1092 bp downstream
Tssr33058	transcription start site region 33058			1115 bp downstream
Tssr33059	transcription start site region 33059			1144 bp downstream