rs30050957 SNP Detail

Summary

• ID
  rs30050957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50233455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGACATG GCAGGCATCC
  TGAACTGCCC ACACAGCCAT TAGTTGATAG CTATCTAAAC CAGGTTTCAT GAGCTTTAAG
  CCTTTTAAGA TTGCTGTAGA GCACAACGCT TCCTGATAAA CAACAAGGAC CTGACATTGC
  CCCTCCTGTA AGACTCATCC CAAATGAGTC TGTCAATCAC CTGGACTTGG AAATGCCCCT
  Y
  AGAGACATTA CAAACAGCAT AAGGCTTTCT TATAAATGTA GGCTGGTACA AAGATCTCTC
  TAATCTTCTA GTCGTGAGAG TGCTTTTCTT TCAGTGGTCC CTCCAATTGA GGCAAACTTT
  CACCTCTTAA AGAGTGGCTC ATTTTGTTCT GTACTCAACT CTGTCCAACT TCTGCATTAT
  GCTCAGATTC TTATGTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49594475	NES12921012	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30050957					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49594475	NES12921012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50233455 () rs orientation: forward

Symbol	Name	Function Class
Rr576143	regulatory region 576143	149 bp distal