rs30047911 SNP Detail

Summary

• ID
  rs30047911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76223790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCACAA GGCGTTCTCT
  GACGTCCACG TGCTGTAACC AAACACACAT GCACACAAAA TGAAATGTAA TTTTAAAAAC
  TGTTTTAAAA TAATCTTTAT AAAACAGCCA CTAGCAATAT ATCTCAAAAA CTTTTAAATT
  TGTGCATAGA TGATAATGTA TGGGTATCTT AGATAACATG TATACCCCAA AGTACCCTCA
  Y
  ATAAAAAATA CTTCAAAACA GAAAAATGCC AGGGCTGGAG AGATGGCTCA GCAGTTAAGA
  GCACCAACTG CTCTATCACA GGTCCCGAGT TCAATTCCCA GCAACCACAT GGTGGCTCAC
  AACCATCTGT AATGGGATCC GATGTCCTCT TCTGGTGTGT CTGAAGACAG CTACAGTGTA
  CTCACATACA TGAAATAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47908871	NES11920436	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30047911					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47908871	NES11920436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76223790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700094J05Rik	RIKEN cDNA 1700094J05 gene			1059 bp upstream
Gm67868	predicted gene, 67868			within coordinates
Pcnt	pericentrin (kendrin)			Intron
				Noncoding-Transcript-Variant
Tssr94172	transcription start site region 94172			881 bp upstream
Tssr98169	transcription start site region 98169			759 bp downstream
Tssr98170	transcription start site region 98170			922 bp downstream