rs30047909 SNP Detail

Summary

• ID
  rs30047909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76223055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCAACA CAGGCCACTC
  AACTTTCCCC GCCATCCGCT CCATCTGAGT GTGAAGGGAA GGAACGTTCA CTGCACGTTT
  ACTTTTCTTT CCAAACGCTT GAAAAAGGTG CTAAGCAATG AGCTGAGACC TGGACCCCAC
  CCCCCACCCC CAACACACGA AGACATTCTT AGGAGGCAAA CAGAAGCACG TTGGCAACTT
  R
  TACTCAGGGA ACAAGGTGAC AGTGCATTTG GACAGCAGAG GACCTGGTGG AACCTTTGTA
  GTATCCTGAA CTCTAAAAGT ACACACACAC ACAATAATAT ATATATATAT ATATATATAT
  ATATATATAT ATATATATAT ATATATATAT ATACATGTAT GTATGTATGT ATGTATGTAT
  ATGTATATAT AAAAGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss47908869	NES11920545	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs30047909					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47908869	NES11920545	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76223055 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700094J05Rik	RIKEN cDNA 1700094J05 gene			1794 bp upstream
Gm67868	predicted gene, 67868			615 bp downstream
Pcnt	pericentrin (kendrin)			Intron
				Noncoding-Transcript-Variant
Tssr94172	transcription start site region 94172			1616 bp upstream
Tssr98169	transcription start site region 98169			1494 bp downstream
Tssr98170	transcription start site region 98170			1657 bp downstream