rs30045168 SNP Detail

Summary

• ID
  rs30045168
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37432404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACAAGAGCT GTAACACTGC CTGGGAAGAG AATGCTCTCC CAAAGCGTTC ACCACCAGAC
  ACTCCCCTGC ACTCTACTTG CTAAACAGTC CCCCCTCCCC CAAACCCCCA ACCCATAGGC
  TCAGCTCTGT TCAATAGCTG GCAGCAGCAC TTCCCCTCCC TGATTGTGCC CTTTCCCCTT
  CACTTGAACC CTACTGTCTG GCCAGGCCAG AGGTCTCTAC GGACAGCCTC TAGTACACAG
  ACCGACACTC CCTTCCACAG TCTTCACATC TCATTGTTTC CAGTGCTCTA ATTACCTATC
  K
  CTGTGTAATA AATATCTCTA GTCCCAACGC CCTAAAGTTA GCATTTCATT GTTAATCATG
  TTCCTGAGTG GACAGGGCTG AGCTCTGCAG GGTGCATCTC TCTGCTTGGT TAGGGTTCTT
  ACACAGCTAC GCTACACACA CACACACACA CACACACACA CACACACACA AACACACACA
  CACACACACA CACACCCGTA CTCTACGCAA TCTGAAAAGG CTTTCAGATG TCTCCCCCTG
  AAGTTGGTTT GTGCCTTTTC AGAGTGGCCA GTCGAAGAAC AAATGTTCAG AGGGTGAGTG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45402326	mCV24331112	ABI	CRAMUS_MOUSE	f	SNP	T	T						G	T
ss46909472	NES10802926	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G		G	G	G		G	G		G
ss134804158	ENSMUSSNP956308	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320709677	CHEV_3_37277177	CHEVERUD	SCREENING_POP	f	SNP												T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30045168					SNP	T	T	G	T	G	T	G	G	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46909472	NES10802926	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37432404 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf2	fibroblast growth factor 2			Intron
				Noncoding-Transcript-Variant
Gm43439	predicted gene 43439			within coordinates
Rr575470	regulatory region 575470			within coordinates
Rr575471	regulatory region 575471			1139 bp proximal