rs30045165 SNP Detail

Summary

• ID
  rs30045165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37432346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCTATCCAG AAGGAATGAA GGTGCGTGAC AATGACTCCG TAGTCTGAGA GCATCTGTCA
  CAAGAGCTGT AACACTGCCT GGGAAGAGAA TGCTCTCCCA AAGCGTTCAC CACCAGACAC
  TCCCCTGCAC TCTACTTGCT AAACAGTCCC CCCTCCCCCA AACCCCCAAC CCATAGGCTC
  AGCTCTGTTC AATAGCTGGC AGCAGCACTT CCCCTCCCTG ATTGTGCCCT TTCCCCTTCA
  CTTGAACCCT ACTGTCTGGC CAGGCCAGAG GTCTCTACGG ACAGCCTCTA GTACACAGAC
  M
  GACACTCCCT TCCACAGTCT TCACATCTCA TTGTTTCCAG TGCTCTAATT ACCTATCTCT
  GTGTAATAAA TATCTCTAGT CCCAACGCCC TAAAGTTAGC ATTTCATTGT TAATCATGTT
  CCTGAGTGGA CAGGGCTGAG CTCTGCAGGG TGCATCTCTC TGCTTGGTTA GGGTTCTTAC
  ACAGCTACGC TACACACACA CACACACACA CACACACACA CACACACAAA CACACACACA
  CACACACACA CACCCGTACT CTACGCAATC TGAAAAGGCT TTCAGATGTC TCCCCCTGAA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45484275	mCV24331111	ABI	CRAMUS_MOUSE	f	SNP	C	C					A		C
ss46909469	NES10802925	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	A		C		A	A		A	C	C		A
ss134804155	ENSMUSSNP5820950	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320709676	CHEV_3_37277119	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30045165					SNP	C	C	A	C	C	A	A	C	C	A	A	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46909469	NES10802925	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37432346 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf2	fibroblast growth factor 2			Intron
				Noncoding-Transcript-Variant
Gm43439	predicted gene 43439			within coordinates
Rr575470	regulatory region 575470			within coordinates
Rr575471	regulatory region 575471			1197 bp proximal