rs30043929 SNP Detail

Summary

• ID
  rs30043929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:117402704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA GGGTAGCTGG AAATGTTTCT
  R
  ACACTTAAAT TGTAAAAACA AATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39144386	mCV24416090	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss49147016	NES12469194	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		G	A	A	A		G	A	A	G		A
ss145406212	ENSMUSSNP3957908	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss324543617	CHEV_13_118054975	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30043929					SNP	A	A	G	A	A	A	A	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147016	NES12469194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117402704 () rs orientation: forward

Symbol	Name	Function Class
A430106F12Rik	RIKEN cDNA A430106F12 gene	553 bp downstream
Emb	embigin	Intron
Tssr121227	transcription start site region 121227	1717 bp downstream
Tssr124180	transcription start site region 124180	1311 bp downstream