rs30043220 SNP Detail

Summary

• ID
  rs30043220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75789667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGAGAA ACCCTGTCTC
  AAACAAAACA AAACAAAACA AAACAAAACA AAACAAAATT TACTTGCATA AAATGGCACG
  GCTCCTGAGG TTAGCTCTGC CATCCAGAGC TGTGGCTGTG GTGAGATAAG CAAAGGAAGC
  GCCTTGGCAC ACAGTTTAAG TGCCAAAAAC AACAAACAAA CAAACAAAAC AAAAGAAAAA
  W
  GGAATTGAGG TAGATACCAG TTTGATATCA CATTTTAATT AAAAATAATG CGAACATCCA
  CTAAGATCAA ATATAAACCG AAAATGAAGA CGGAAGAGAT GTTACTGGTT TCAAAATCTG
  CTCCATGATC CGCTATAGCT CATAAAGACG TCATTAACGA CCCTTCTTCA GTTGTCCCAC
  ATTAGTCCCA CCTGCGCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906523	NES11926880	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30043220					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906523	NES11926880	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75789667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1739	CpG island 1739	561 bp proximal
Gm5134	predicted gene 5134	681 bp upstream
Gm40698	predicted gene, 40698	17 bp downstream
Rr402000	regulatory region 402000	1978 bp downstream
Rr434193	regulatory region 434193	1831 bp distal
Rr434194	regulatory region 434194	283 bp proximal
Rr434195	regulatory region 434195	761 bp proximal
Tssr94163	transcription start site region 94163	688 bp upstream