rs30043216 SNP Detail

Summary

• ID
  rs30043216
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75788776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGACAAG TCATTTCATG
  TATGGGAGGA GCACTATGGT CGAGAAGCAC ATCTCATACT TAGAGTCAGT CCTAGCGATT
  CTGATTATTC CCATCCAGGT AGAAATCTTT GCCATTTATT GCAGTCAGCT AGCAGCACTG
  CTACTGCAGT CCCCAGCTGA CATCTACCAC CCTCTACTTA ACAAATAGCC CGTTATTGTA
  W
  GTATTATATA CATTTGTACG TCACGTGATG CCTAATCTTG CTTGTCAGCT TGACCACATC
  TGGAATCAAC TAAACCCCAA GCCATGAGGG ATTATTCCTG ATTGAATCAT CTGAGTGGGG
  AAGACCCACC TCACATCTGG ATCTTTTGAG GAAGGGACTA GTCTGAAAGC TAAGTCACAA
  CTTTGGTTCG CAGTCCGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906519	NES11926920	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30043216					SNP	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906519	NES11926920	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75788776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1738	CpG island 1738	1613 bp distal
Cpgi1739	CpG island 1739	1452 bp proximal
Gm5134	predicted gene 5134	1572 bp upstream
Gm40698	predicted gene, 40698	908 bp downstream
Gm65908	predicted gene, 65908	1995 bp upstream
Rr402000	regulatory region 402000	1087 bp downstream
Rr434190	regulatory region 434190	1526 bp distal
Rr434191	regulatory region 434191	1835 bp distal
Rr434192	regulatory region 434192	1158 bp distal
Rr434193	regulatory region 434193	940 bp distal
Rr434194	regulatory region 434194	1174 bp proximal
Rr434195	regulatory region 434195	1652 bp proximal
Tssr94163	transcription start site region 94163	1579 bp upstream