rs30043214 SNP Detail

Summary

• ID
  rs30043214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75788740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGCAACA GAAACGACTA
  TGTTCACCCA AAATTCAAGA GACAAGTCAT TTCATGTATG GGAGGAGCAC TATGGTCGAG
  AAGCACATCT CATACTTAGA GTCAGTCCTA GCGATTCTGA TTATTCCCAT CCAGGTAGAA
  ATCTTTGCCA TTTATTGCAG TCAGCTAGCA GCACTGCTAC TGCAGTCCCC AGCTGACATC
  Y
  ACCACCCTCT ACTTAACAAA TAGCCCGTTA TTGTATGTAT TATATACATT TGTACGTCAC
  GTGATGCCTA ATCTTGCTTG TCAGCTTGAC CACATCTGGA ATCAACTAAA CCCCAAGCCA
  TGAGGGATTA TTCCTGATTG AATCATCTGA GTGGGGAAGA CCCACCTCAC ATCTGGATCT
  TTTGAGGAAG GGACTAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906517	NES11926917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30043214					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906517	NES11926917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75788740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1738	CpG island 1738	1577 bp distal
Cpgi1739	CpG island 1739	1488 bp proximal
Gm5134	predicted gene 5134	1608 bp upstream
Gm40698	predicted gene, 40698	944 bp downstream
Gm65908	predicted gene, 65908	1959 bp upstream
Rr402000	regulatory region 402000	1051 bp downstream
Rr434189	regulatory region 434189	1991 bp distal
Rr434190	regulatory region 434190	1490 bp distal
Rr434191	regulatory region 434191	1799 bp distal
Rr434192	regulatory region 434192	1122 bp distal
Rr434193	regulatory region 434193	904 bp distal
Rr434194	regulatory region 434194	1210 bp proximal
Rr434195	regulatory region 434195	1688 bp proximal
Tssr94163	transcription start site region 94163	1615 bp upstream