rs30042667 SNP Detail

Summary

• ID
  rs30042667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75774163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGTGGG GATCTCAAGC
  GCTCGGGGAG TGGGGGGGGG GCAACTCTCA CATCCTGTCT GTGACCTTTC CCTTCTTGCT
  GATGTAACTT CTTAGTAACC GCCAGATCCT GGAAGAGGAG TCCTGCTGGA TTGCTGTCTG
  TTTGCAGTTG ATCATAAAGC AGAGGTCAGG GCCAGTCCCC TTGGATTCAA GTCCAGCTTG
  R
  CTGTGGTGTA CCGGCTCATA GAACCTGCTG GAATGGAAGC AGGCCCTTAA GACCACAGCT
  CAGAAAAAAA AAAAAAAAAG ACACAGCTCA GATTGCTTCA TCGTACAGTC GCTACGTTCA
  CTGAGTTCAG TCAACAACAT GCATTGAACA CCTACTGTGT GCTAGGCTGG AGAAACGTGG
  GCCAGCTTCC TAAACGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906419	NES11927816	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30042667					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906419	NES11927816	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75774163 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			582 bp downstream
Gm867	predicted gene 867			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr384937	regulatory region 384937			within coordinates
Rr434185	regulatory region 434185			within coordinates
Tssr94154	transcription start site region 94154			1996 bp downstream
Tssr94155	transcription start site region 94155			1912 bp downstream
Tssr94156	transcription start site region 94156			1155 bp downstream
Tssr94157	transcription start site region 94157			1134 bp downstream
Tssr94158	transcription start site region 94158			996 bp downstream
Tssr98154	transcription start site region 98154			59 bp downstream
Tssr98155	transcription start site region 98155			1635 bp downstream
Tssr98156	transcription start site region 98156			1675 bp downstream
Tssr98157	transcription start site region 98157			1711 bp downstream