rs30042665 SNP Detail

Summary

• ID
  rs30042665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75774051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTCAAATG GGGTGGGGTG GGGATCTCAA GCGCTCGGGG
  AGTGGGGGGG GGGCAACTCT CACATCCTGT CTGTGACCTT TCCCTTCTTG CTGATGTAAC
  Y
  TCTTAGTAAC CGCCAGATCC TGGAAGAGGA GTCCTGCTGG ATTGCTGTCT GTTTGCAGTT
  GATCATAAAG CAGAGGTCAG GGCCAGTCCC CTTGGATTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906417	NES11927815	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30042665					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906417	NES11927815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75774051 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			470 bp downstream
Cpgi1737	CpG island 1737			1777 bp distal
Gm867	predicted gene 867			mRNA-UTR
				Noncoding-Transcript-Variant
Rr384937	regulatory region 384937			within coordinates
Rr434185	regulatory region 434185			within coordinates
Tssr94151	transcription start site region 94151			1958 bp downstream
Tssr94152	transcription start site region 94152			1925 bp downstream
Tssr94153	transcription start site region 94153			1895 bp downstream
Tssr94154	transcription start site region 94154			1884 bp downstream
Tssr94155	transcription start site region 94155			1800 bp downstream
Tssr94156	transcription start site region 94156			1043 bp downstream
Tssr94157	transcription start site region 94157			1022 bp downstream
Tssr94158	transcription start site region 94158			884 bp downstream
Tssr98154	transcription start site region 98154			171 bp downstream
Tssr98155	transcription start site region 98155			1747 bp downstream
Tssr98156	transcription start site region 98156			1787 bp downstream
Tssr98157	transcription start site region 98157			1823 bp downstream