rs30042312 SNP Detail

Summary

• ID
  rs30042312
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75788650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACGTGGC AGCTTGAAAC
  TGTCTGGTGC CGTCTTCTGG TGTGCAGATG TACATACAGC AATAACCCCC CCCACACACA
  CACACATAAA TATTGCAACA GAAACGACTA TGTTCACCCA AAATTCAAGA GACAAGTCAT
  TTCATGTATG GGAGGAGCAC TATGGTCGAG AAGCACATCT CATACTTAGA GTCAGTCCTA
  R
  CGATTCTGAT TATTCCCATC CAGGTAGAAA TCTTTGCCAT TTATTGCAGT CAGCTAGCAG
  CACTGCTACT GCAGTCCCCA GCTGACATCT ACCACCCTCT ACTTAACAAA TAGCCCGTTA
  TTGTATGTAT TATATACATT TGTACGTCAC GTGATGCCTA ATCTTGCTTG TCAGCTTGAC
  CACATCTGGA ATCAACTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906515	NES11926915	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30042312					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906515	NES11926915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75788650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1738	CpG island 1738	1487 bp distal
Cpgi1739	CpG island 1739	1578 bp proximal
Gm5134	predicted gene 5134	1698 bp upstream
Gm40698	predicted gene, 40698	1034 bp downstream
Gm65908	predicted gene, 65908	1869 bp upstream
Rr402000	regulatory region 402000	961 bp downstream
Rr434189	regulatory region 434189	1901 bp distal
Rr434190	regulatory region 434190	1400 bp distal
Rr434191	regulatory region 434191	1709 bp distal
Rr434192	regulatory region 434192	1032 bp distal
Rr434193	regulatory region 434193	814 bp distal
Rr434194	regulatory region 434194	1300 bp proximal
Rr434195	regulatory region 434195	1778 bp proximal
Tssr94163	transcription start site region 94163	1705 bp upstream