rs30041662 SNP Detail

Summary

• ID
  rs30041662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGATCAAG CAGTTCCTGG ACTGCTCCAC CACTCAGAGC
  GACCTAACCC TGTGTGAGGG CTTCAGCGAG GCCCTCAAAC AGTGCAAATA CAATCACGGT
  R
  AGCAGTCATT TTGGTGCATG TGGGGGTGGA GGGGTGGACC CTTCGGTACC TGCGCGGGCT
  GGCAGGCTGG CGAGCTGATC GGCTGATCAG CGCTTTGTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906413	NES11927813	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30041662					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906413	NES11927813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			Intron
				Splice-Site
Cpgi1737	CpG island 1737			1017 bp distal
Gm867	predicted gene 867			266 bp downstream
Rr384937	regulatory region 384937			within coordinates
Rr401998	regulatory region 401998			1412 bp downstream
Rr434184	regulatory region 434184			1874 bp distal
Rr434185	regulatory region 434185			within coordinates
Tssr94149	transcription start site region 94149			1585 bp downstream
Tssr94150	transcription start site region 94150			1549 bp downstream
Tssr94151	transcription start site region 94151			1198 bp downstream
Tssr94152	transcription start site region 94152			1165 bp downstream
Tssr94153	transcription start site region 94153			1135 bp downstream
Tssr94154	transcription start site region 94154			1124 bp downstream
Tssr94155	transcription start site region 94155			1040 bp downstream
Tssr94156	transcription start site region 94156			283 bp downstream
Tssr94157	transcription start site region 94157			262 bp downstream
Tssr94158	transcription start site region 94158			124 bp downstream
Tssr98154	transcription start site region 98154			931 bp downstream