rs30038959 SNP Detail

Summary

• ID
  rs30038959
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:47624105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAATAT GAAAATGTTA
  AGGGATTAAA AATGCAAGTT ACTGCAAATT AAAGCAAGAC AAATAGACAC TATATGAAAT
  ATTTTTTATC AGTCAAACTG TTGCAGATGT GGAGAAAACA ACTAAACAGA AATCTTTAAA
  AAATATTTTT CTCACTGGAA ATATCTTACT CTGTGAATAT AAAATAAAGA TTACTTAAAA
  K
  GGATCAGACT TTGTAAGCTT TGAAGCTGTC ATTAATATAA ATGGCTCTGT CGGCAACATT
  GCTAGTAGAG TGTGTTCGAG CCCCTAAAGT GTGTGATATA TAAGAAAACG CTTGAAGGAG
  GACTGGATCA TGAATTGGAC CACCTTTCTA GCCTTGCTAT TGTTATCTAT TAGGCTGTAA
  GGCCAGAATA TGCTTCAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49593057	NES12914139	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30038959					SNP	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593057	NES12914139	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:47624105 () rs orientation: forward

Symbol	Name	Function Class
Rr576075	regulatory region 576075	412 bp distal