rs30036593 SNP Detail

Summary

• ID
  rs30036593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75679762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCTTTC TGGGTCTCCC
  AAGTGAACGT TCTCCAGATA GAACTGTCCT GTGATAAACC ATTCAAAAGT GGCCTCTCTG
  CAAACTTCAG GGTGTGAATC GATGTTATTA TTTCTCTATC CTAACCCAAG AAAAATCGCA
  TATTCTTTGA AGGGCCCCAT TCCTTTTAAT GCCATTTTCC GTGGATATAA ACAAAGCTTT
  Y
  GGGACTCCAG AGTCAGCCGT GATGGAACGC ACAAGCCCAT GAACTGGGGA CCAACTCTGA
  AGGTCTAGAG AATCAGGGAG GGAGGGATCC TTGTTTGCCT CCGTTCTATC AGGAACCTTT
  GGGAATGGGG CAGGGGGGGA GTTTCATTCT ACCCATGGAC TCTTGCTGTA AAGGCCTTTA
  AGAATGCTGA CCTCGGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47905981	NES11931886	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30036593					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905981	NES11931886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75679762 () rs orientation: forward

Symbol	Name	Function Class
Gm65903	predicted gene, 65903	804 bp upstream
Rr434152	regulatory region 434152	939 bp proximal
Rr434153	regulatory region 434153	1170 bp proximal
Tssr94142	transcription start site region 94142	1963 bp downstream
Tssr94143	transcription start site region 94143	1386 bp downstream