rs30036126 SNP Detail

Summary

• ID
  rs30036126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75790866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTAACC AAGCCATTCT
  AGACCATTGC CCCTTCCTGT GCCCTATAAC CGTCCCACCT ACCCACCCCG CCCCCAGCCC
  CGAAATACTA GTCAAGTAAC TCACCCGTGC TTGCCCTGCT CCCTAGAACC CCAAACCCGG
  ATGGTATTTT GAAAGCCCCT GTGATTGATT GACACAAGAA TGCTGCTCTA ACATTCTGTC
  Y
  GCTCTATCCA TCTGCAGATC TAGCCGATCA TGCTCAAAGT GTCTGAGATT TTCTTTCATT
  TCCAGCGCTT AAGCATTATA ATTTCTAATT TCTAAATCCA GAGGCATTAT AAAGCACGCA
  AGAGGATGTC TGGTGGTTAC ATCCAAATAG TATAAGACTT TTAGTTATAG AAGAGACTTG
  AGCTAAGAGA GTCTAGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47906537	NES11926842	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30036126					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906537	NES11926842	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75790866 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1739	CpG island 1739			291 bp distal
Gm5134	predicted gene 5134			Intron
				Noncoding-Transcript-Variant
Gm40698	predicted gene, 40698			473 bp upstream
Rr434194	regulatory region 434194			479 bp distal
Rr434195	regulatory region 434195			84 bp distal
Tssr94163	transcription start site region 94163			484 bp downstream