rs30033040 SNP Detail

Summary

• ID
  rs30033040
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121069012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA GCTCGGCCAG CGCTGTGCTG
  S
  CAGCAAAGAT GAGGTAAGAG GAAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46366523	mCV24890772	ABI	CRAMUS_MOUSE	f	SNP		G	C						C
ss61237527	NES16854897	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C	C	C	C	G		G	G	G	C		C
ss137064552	ENSMUSSNP4336674	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							C
ss323230731	CHEV_9_121149064	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30033040					SNP	G	G	C	C	C	G	C	C	C	C	G	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61237527	NES16854897	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121069012 () rs orientation: forward

Symbol	Name	Function Class
Rr688903	regulatory region 688903	1492 bp distal
Rr688904	regulatory region 688904	398 bp proximal
Rr688905	regulatory region 688905	522 bp proximal
Rr688906	regulatory region 688906	1945 bp proximal
Ulk4	unc-51-like kinase 4	Intron