rs30031739 SNP Detail

Summary

• ID
  rs30031739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72280305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACTGTCCGC ATTGCCCGAC AGATATGGCA CTAGACTGCA GCCAAAGGAC TCTCTGAAAC
  TATTAACAAG GTTGTGAGAA CTTGTGACCA GTCTGTGAGG TGCTGTGTCT GGGTGTCATG
  CCACTGGGGA CATCATCAGT GTCACCAGTG GCACAGTGGA ATGCCTGGTG AGCTGAGACA
  CACAAATGAG GCAGGCGTGG TGGGCACACA CCTGTAATCC CAATGGGACG TAAACCTGGT
  ATGGCAGTGC TCACCTGTAT GTGGTGGCAC TCAGGAAGTG GAGGCAGGAG CATTAGGAGT
  Y
  TAAGGTCATC CTCAGCTACA TTGACAAATC TGAGACCAGC CTGGGCGACA TGAGTCCTTG
  TGTTAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAGAGAG AGAGAGAGAG AATCAGACAG
  TGGTGGTGCA TGCTTTTAAT CCCAGCACTT GGGAGGCAGA GGCAAACAGA TTACTGTGAG
  ATCAAGGCCT GCCTGGTCTT CAGAGCAAGT TCCAGGACAA GCAGGGCTAC ATAGAAAAAA
  CCCGTCTCTA TAAACAAACA AAACAAAACA AAACAAAAAA AAGCAGATCT CGTGACTCTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45888845	mCV22350913	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30031739					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72280305 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	427 bp distal
Rr632126	regulatory region 632126	799 bp proximal
Sftpb	surfactant associated protein B	1289 bp upstream
Tssr57078	transcription start site region 57078	982 bp upstream
Tssr57079	transcription start site region 57079	998 bp upstream
Tssr57080	transcription start site region 57080	1271 bp upstream
Tssr57081	transcription start site region 57081	1305 bp upstream
Tssr57082	transcription start site region 57082	1719 bp upstream
Tssr57083	transcription start site region 57083	1747 bp upstream