rs30030308 SNP Detail

Summary

• ID
  rs30030308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56544364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACTTTTG AAAGTTTTTT
  TTTTCTACTG AAGTCAAGAA AATTACAATT CACATGACCT TTTGATGGAC AGTTTTGACC
  TTGGAGCTTT TAGTTCATTT TGAAGCACCT TCTCTGAGCA CAGACTATTG CCTCTAGAGA
  GTGAAAGGTA AAGAAGCCTT GTCCCCTGAG GACTTCTCAC AGGCTACCAC CATCTGATGC
  Y
  GGGCCGGCCG GCTCTGGGGT GAACTCCTGG GTCTGCAGTG AGGATGTCTT TCCAGTGGGA
  TGGAGAGTGG AGGAGGGAAG CAAGCTAATG AAGGGTAGGC ATGACTTCTC AATGCTCACT
  TAGGGGAATG GCATTCCTGG CTGCAAGAAT GATCTGGAGA AAGTTGTCTG ACAGGTGCGA
  TACAGTGTAT CTGGAACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45888919	mCV25430898	ABI	CRAMUS_MOUSE	f	SNP	T	C				C		C
ss47928718	NES11637712	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C		C	C	C	T	T	C	T	C
ss133228448	ENSMUSSNP1962928	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30030308					SNP	T	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47928718	NES11637712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56544364 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			1045 bp proximal
Gm66600	predicted gene, 66600			1244 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			965 bp proximal
Rr631076	regulatory region 631076			1714 bp proximal
Tssr1858	transcription start site region 1858			1772 bp downstream
Tssr61134	transcription start site region 61134			1542 bp downstream
Tssr61135	transcription start site region 61135			1563 bp downstream
Tssr61136	transcription start site region 61136			1729 bp downstream
Tssr61137	transcription start site region 61137			1804 bp downstream