rs30029417 SNP Detail

Summary

• ID
  rs30029417
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCACA GCCCAAACAC
  AGGCTCTAGC CTTATCTCTC ACCTGCCTTC ACCTGCTCAC AGACAGCAAT CTACACAGAA
  ACTCAGAGCA AACACCTGGA GGCAGGAGCT GATGCAGAGG CCATGAAGGG AAGCTGCTTA
  CTGGCTTGTT CAACCTGCTT TCTTACAGAA CCCAGGACCA CAAGCCTCAG ATGGCACCAG
  M
  CTGGGCCCTC CCCCATCAAT CACTAATTAG AAAAATATCC TGCAGGCCTT GCCTACACCT
  TGATCTTATG GAGGCATTTT CTTGATTGAG GTTCCCTCCT CTCCGATAAC TTTGGCCTGT
  GTCTGTCTAA CCAGAACAGT AGTCAATGCG TGGGGGAGGG GGTAACATAG TAGAAAGGAG
  AACCAGGTTT GATAAGAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39143885	mCV25044075	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss149030165	ENSMUSSNP7070119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30029417					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622114 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1580 bp upstream
Rr480226	regulatory region 480226	1822 bp distal
Rr480227	regulatory region 480227	1269 bp proximal
Rr480228	regulatory region 480228	1367 bp proximal
Rr480229	regulatory region 480229	1987 bp proximal