rs30028332 SNP Detail

Summary

• ID
  rs30028332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121080868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTAATGAA ATCTGATGCC
  CTCTTCTGGG GTGTCTGAAG ACAGCTGCAG TGTACGTACA TATAATAAAT AAATAAATAT
  TAAAAATAAA AATAAAATAA AATAATGAGA CAACATTAAA ATTCAGTTCA AGAGCCCAGC
  TAGCTCAGTT GGTAGGACAT GAGACTCTTT AATCTAAGGG TCATAGGTTT GAGCCCAACA
  Y
  TGGGTGAACA TTGGGTGAAC GTTAGGTGCT TCCTTGGGCT AGAGAGATGG CTCAGTGGTT
  AAGAACACTG ACTGCTCTTC CAGAGGTCCT GAGTTCAATT CCCCCAGCAA CCACATGGTG
  GCTCACAACC ATCTGTAAAG TGGTCTGGTG CCCTCTTCTG GTGTGTCTGA AGACAGCTAC
  AGTGTAGTCA TATACACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45388568	mCV23993535	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135717567	ENSMUSSNP1852457	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30028332					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121080868 () rs orientation: forward

Symbol	Name	Function Class
Rr375663	regulatory region 375663	508 bp upstream
Rr584034	regulatory region 584034	1552 bp distal
Rr584035	regulatory region 584035	720 bp distal
Rr584036	regulatory region 584036	167 bp distal
Rr584037	regulatory region 584037	145 bp proximal