rs30027737 SNP Detail

Summary

• ID
  rs30027737
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95149509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCTAGAAAA CTGAGTGCTT GCATCACTTC CCATCCTTTG CTCCTAACAT GCTCCCCACT
  GGATTCTATC TCTTCCTTGC AGGCTTTACC TCTTCCTAGT ACAGAAGGCA CGTAAGAACC
  TGAGGACGAC ACAGACTTTC CGTGTTGGGG TTATTCTTTG GTGCCCCCCA CCTCAGTGTC
  TCTTCCATGA CATTTTCTTT TTTTAATATA GTTTTTTTCT TTTCTTTTCT TTTCTCTCTC
  TCTCTTTCTT TCTTTCTTTC TTTTTTCTTT TTCTTTTTTT TTTTTTTTTG GTTTGGTTTG
  K
  TTTGTTTTTT TTCGAGACAG GGTTTCTCTG TGAGGCCCTG GCTGTCCTGG AACTCACTCT
  GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CCACCTGCCT CTGCCTCCCA AGTGCTGGGA
  TCAAAGGTGT GTGCCACCAC TGCCCAGCTT CTGTGACATT TTCATCTGTC CTTTAAGTTC
  TATTTATATT TACTTATGAC TGCGCGCGCG CGCGCGCACA CACACACACA CACACACACA
  CACACATACA CACACACACA CACACACACG TGTGTGCGCC CGTGCCATGG ACTTATTCCA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45388630	mCV22580065	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30027737					SNP	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95149509 () rs orientation: forward

Symbol	Name	Function Class
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like	Intron
Cpgi13505	CpG island 13505	1122 bp distal
Gm128	predicted gene 128	600 bp upstream
Rr580872	regulatory region 580872	979 bp distal
Tssr34451	transcription start site region 34451	1173 bp upstream
Tssr34452	transcription start site region 34452	1095 bp upstream
Tssr34453	transcription start site region 34453	1052 bp upstream
Tssr34454	transcription start site region 34454	1016 bp upstream