rs30027676 SNP Detail

Summary

• ID
  rs30027676
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115832890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTACATTTAA AAAGTTACAG ACAGCAAATG CAAAAACTGT CAGGTGGGGT TTTTTTTTAG
  AACTAAAGTA TATTTGCACA ACAAAGAAAG AGATCCCTTT TACCATTTTG TTTAGACAGG
  CAAACTATCT GATCGGCATA AGAAGATAGC TAGTGAAGAG TAAGTGTATG AAAAAACTCT
  AAGCACCACT AAGAGATCAA AGCTACAGTG AGATATCCTC TCACTCCTGT TAAAATAGTG
  AGTGACTTGT AATAGCAAAC ACACACACAC ACACACACAC ACACACACAC ACACCCAAAC
  W
  AAATAAATGT TAATAAGGAG GAGGCAAGAA TACTTTAATC TTAGTACTTT AGTGGTAATC
  TAATTAATAT GGCCATTGTG AAATATATTA AAGCTTCCCT CAAACGAGCT AGAAATAGAG
  CTGCCACCAG GCATTCTTCT CCTGTCATTG CATGGGTAAC TAAAGGAATG AAATCAGTGT
  ATTGAAGAGG TGTAGCTGGT CTGTGCTACT TTGTAGGCTC CTTTTTCTTC TACCCTTCGC
  CACCCTTTAT CCACCCCTTC AACTCCCTAA CACTAGACAG GAGAGGGAAA AAAAAGAATA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45388733	mCV23906242	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss135668195	ENSMUSSNP5371931	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30027676					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115832890 () rs orientation: forward

Symbol	Name	Function Class
Rr583646	regulatory region 583646	1723 bp proximal