rs30025523 SNP Detail

Summary

• ID
  rs30025523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108306026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCTAGGAC TGTCCATTGC AAACAATAAA AATGACTAAC
  ACCGGCTGAA CAGTAAGACC CTTGCCTAGC CTGAACATTC TGTGTAGAGG CTGAAGTCAG
  Y
  ACTGAGTACA GTGAAGTTGT GATGTTTCTG CCAGATTTGT GATATGAACC CTGTGGTCCT
  ATGACTCCAT CCCTACTCTG TCTTGAAGGG ACTCTGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45888205	mCV23139565	ABI	CRAMUS_MOUSE	f	SNP	T		T					T		C
ss51817540	NES14771495	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	T	C	T	T	C	T
ss133499641	ENSMUSSNP5758582	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30025523					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51817540	NES14771495	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108306026 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr399811	regulatory region 399811	1067 bp downstream
Rr399812	regulatory region 399812	455 bp downstream
Rr636076	regulatory region 636076	1101 bp distal
Rr636077	regulatory region 636077	1392 bp proximal