rs30022218 SNP Detail

Summary

• ID
  rs30022218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57513401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGGGCA GGTTTCATGC
  ACAGGAATAC TGGTCAACAC TAAATTGACT CCATGATTTT TTATGTGTGC GTGTTTTGGT
  TTTGTTTTGA TACTTTTTAA GTCTTTTTAA AAATATTCAT TTATTTATTT ATTTATACAC
  TGTACACTAT AGCGGTCTTC AGACACTCCA GAAAATGGCA TCAGATTTCA TTACGGATGG
  Y
  TGTGAGCCAC CATGTGGTTG CTGGGGTTTG AACTCGGGAC CTTTGGAAGA GCAGTCAGCG
  CTCTTAACCG CTGAGCCATC TCACCAGCTC CCCCCACCTC CACTTTTTAA GTCTTAATTG
  GGTTGTTTTT GTTTTGATTT TGGGTTTTTG TTTTTTTGTT TTGTTTTTTG TTTTTGGGTT
  TTTTTTTTGA GACAGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45885966	mCV25134585	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss133241392	ENSMUSSNP2146357	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30022218					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57513401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	1156 bp distal
Cpgi17484	CpG island 17484	549 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	948 bp upstream
Rr399669	regulatory region 399669	698 bp downstream
Rr631141	regulatory region 631141	1001 bp distal
Rr631142	regulatory region 631142	500 bp distal
Tssr61156	transcription start site region 61156	1021 bp upstream
Tssr61157	transcription start site region 61157	995 bp upstream
Tssr61158	transcription start site region 61158	969 bp upstream
Tssr61159	transcription start site region 61159	919 bp upstream
Tssr61160	transcription start site region 61160	903 bp upstream