rs30020624 SNP Detail

Summary

• ID
  rs30020624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119468458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACA TTCAGCAGGT AATGTCAACA
  Y
  GGCTTTAATG CACACAGGGA GAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45887027	mCV25396558	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss321928168	CHEV_6_119441515	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30020624					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119468458 () rs orientation: forward

Symbol	Name	Function Class
Rr637698	regulatory region 637698	1120 bp distal
Rr637699	regulatory region 637699	1568 bp distal
Rr637700	regulatory region 637700	within coordinates
Rr637701	regulatory region 637701	534 bp distal
Rr637702	regulatory region 637702	307 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron