rs30020248 SNP Detail

Summary

• ID
  rs30020248
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17748589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATGCAG GAAGACTTTT
  ATTTGCTCCG TGAGTCAAGA AGCAAGTTGC TATTATTTTC AATTCTTTTT GTTTGAGCAG
  ATTAAGAAGA AATAGGCTAG TCACAAATTC CCATTTGCCC ACAAGTGTAC ACAGGTGTGT
  GAGCACAGCC TTACAATACC TGAGTTACTC TGAAAATGAC AGAAATTTTC AAAAGGTAAA
  R
  TTTAAAATAA GGCAGAAGGA ATAAGATGAG AAATATGTGT AGACAAATTT GTGGTTTTCG
  TATTTGAATA ATGTTTGCCA ATATGTGAAA GTGTAACCTC TACTATTTGA GACTATTATC
  TCACTAATGC GTTCATGGGC ATGTGAATGT CCCAAACATA TGTAGCATGT GTCTTTTCAT
  CTACTTGTAA TTAAATAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45886641	mCV22807001	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss47815154	NES11712050	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	A	A	G	A	G
ss133021953	ENSMUSSNP456320	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30020248					SNP	A	A	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815154	NES11712050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17748589 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			within coordinates
Rr626852	regulatory region 626852			514 bp distal
Rr626853	regulatory region 626853			90 bp proximal
Rr626854	regulatory region 626854			637 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			498 bp upstream
Tssr55095	transcription start site region 55095			413 bp upstream
Tssr55096	transcription start site region 55096			550 bp upstream
Tssr55097	transcription start site region 55097			582 bp upstream
Tssr55098	transcription start site region 55098			978 bp upstream