rs30020067 SNP Detail

Summary

• ID
  rs30020067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72284490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA AAAAAAAAAA AAACAGTTCA
  Y
  CAATAGTAAG CATCTCTTCT GTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45887789	mCV25198431	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss133283796	ENSMUSSNP2325182	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321821413	CHEV_6_72257500	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30020067					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72284490 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	962 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57084	transcription start site region 57084	1846 bp downstream
Tssr57085	transcription start site region 57085	1609 bp downstream
Tssr57086	transcription start site region 57086	1564 bp downstream
Tssr57087	transcription start site region 57087	1529 bp downstream
Tssr57088	transcription start site region 57088	1477 bp downstream
Tssr57089	transcription start site region 57089	716 bp downstream
Tssr57090	transcription start site region 57090	641 bp downstream
Tssr57091	transcription start site region 57091	579 bp downstream
Tssr57092	transcription start site region 57092	294 bp downstream