rs30018138 SNP Detail

Summary

• ID
  rs30018138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66445617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGTTCCT TCCTCTGGTG AGGTGAAAGG TGGAGATCAC
  AGGATCCCTG GAAGTTTACA GACCAGCTAG CAATGGCAAA CTAGAAATCT TGTTTCAAAA
  W
  ATATGGAAGG TAAGAACCAA CATTTGAGGT TGCCTCTGAA CTACAGATGT GACATGGCAC
  GTATGCCATG GCGTGTAAAA GCACCCACAT GAACGTGCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39639254	mCV24983810	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss147330810	ENSMUSSNP4783777	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss325660091	CHEV_18_66472200	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30018138					SNP	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66445617 () rs orientation: forward

Symbol	Name	Function Class
Gm15958	predicted gene 15958	within coordinates
Rr539711	regulatory region 539711	1118 bp distal
Rr539712	regulatory region 539712	302 bp proximal
Rr539713	regulatory region 539713	344 bp proximal