rs30016960 SNP Detail

Summary

• ID
  rs30016960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152633092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCATAA TAATGCTTCC
  TGGCTCTGAC GTCTTAAAGG GTTAGTGCAG AAGAAACCAT TTTGGCTATT TTAGCAGAGA
  GTTCAGTGTT TGACGAGTCA GGTGATTTCT GGTCTTTGCT TTAGTGACAG CTCTCCTCAG
  ACCCTCAGCT TCATCTGGTA AGAAGTGACC GGATGGATTT GGGAATGCTT ATTGTTGAGC
  R
  TGGGAGAAAT GCTAAACATG GCATGTCGAG GAAATCAATC TAATACGCAT ATATTAAGAG
  AAGCAGGGCT TAATTGTACT CGTGGCTGCA CCAGCAGGGG CTGGAGAGGG CTAGGCTTTA
  TAGGCACCCA CTGTTCTCTG TAACTTGAAT TAAAAGGCAT CAAAATGCCT TGGTCTACTG
  GTTGCTCTAG GCCTTTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45387049	mCV22358366	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss136104936	ENSMUSSNP1045183	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss321029238	CHEV_3_152590419	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30016960					SNP	G	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152633092 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	1439 bp upstream
Rr587626	regulatory region 587626	909 bp distal
Rr587627	regulatory region 587627	995 bp proximal
Rr587628	regulatory region 587628	1450 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1434 bp upstream