rs30016920 SNP Detail

Summary

• ID
  rs30016920
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17942619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCG TGCGCGGGAG AGTTGACCTT
  H
  GTCTTGGACA AGCTTTCTCC TGACT                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45887291	mCV23798756	ABI	CRAMUS_MOUSE	f	SNP	C	A			T	A
ss47816578	NES11703563	PERLEGEN	MM_PANEL2	f	SNP		A	A	T		A	A		A		T
ss133025421	ENSMUSSNP2977097	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
ss321756622	CHEV_6_17892620	CHEVERUD	SCREENING_POP	f	SNP								C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs30016920					SNP	C	A	A	T	T	A	A	C	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47816578	NES11703563	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17942619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626887	regulatory region 626887			1178 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant