rs30016577 SNP Detail

Summary

• ID
  rs30016577
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77065423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC GCTGGGCAGT AGTGGCGCAA
  M
  GCCTTTAATC CCAGCACCCG GGAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39638296	mCV22711841	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
ss147545118	ENSMUSSNP1442501	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30016577					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77065423 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B430105A11Rik	RIKEN cDNA B430105A11 gene			1565 bp upstream
Katnal2	katanin p60 subunit A-like 2			Intron
				Noncoding-Transcript-Variant
Rr541072	regulatory region 541072			218 bp proximal
Rr541073	regulatory region 541073			409 bp proximal