rs30016321 SNP Detail

Summary

• ID
  rs30016321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78872327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGT GACAAAGCAA TGCCCTCGGG
  Y
  ACCGTGCGAG TAGAAAGAGA AACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45387137	mCV24563827	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135365553	ENSMUSSNP6432130	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320809392	CHEV_3_78768942	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30016321					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78872327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13272	CpG island 13272	1780 bp proximal
Gm9762	predicted pseudogene 9762	1336 bp downstream
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	434 bp downstream
Rr578452	regulatory region 578452	198 bp distal
Rr578453	regulatory region 578453	1623 bp proximal
Rr578454	regulatory region 578454	1798 bp proximal