rs30015616 SNP Detail

Summary

• ID
  rs30015616
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83544555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAACAAG TATTTTTGTA
  TAGAAACAGT TCACTCAGAA AGTCATGAGG ACAGTCAATA AAAGATGCAC TAAGGATCCT
  TATCTCATAT TTTCTGGTTT CTGAAGTTAA TCATGGAAGA AGAAAGCCTG AGCACGGGAG
  AGCCCTTCTT TGGTCTATAA ACCCCAATCC CAGTAAACGC CTTCAATATG GGTGATGGTT
  M
  ACTTTCGGAA GGAGGATTTG TGTTGGAGGA GGCTCACACA GTACAGCACA CCAGGGCTGC
  TTGACTATTC GGAGTCCCTC CTGTGCAGCC TCCTGATGCC CATAAAAAGC TGTGAAAGAA
  TCCACAGGCT GCCTTATTGT CTGTGCTCAT CATGAAAGTA TGTACTGATC CCACATGCTG
  GAGATCTTTC TTCTATACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45884551	mCV22811869	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					A	A
ss51353809	NES13744948	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	A	A		A	A		A	A		A
ss133348378	ENSMUSSNP6317119	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
ss321844561	CHEV_6_83517567	CHEVERUD	SCREENING_POP	f	SNP											C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30015616					SNP	C	C	A	C	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353809	NES13744948	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83544555 () rs orientation: forward

Symbol	Name	Function Class
Gm21284	predicted gene, 21284	466 bp upstream
Rr632893	regulatory region 632893	1397 bp proximal
Stambp	STAM binding protein	Intron