rs30014996 SNP Detail

Summary

• ID
  rs30014996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101617466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTATCATCA GCACCAGTGA GGAAAAAGGA CACAGAGAGG
  AAAAAGCATG AGAACTGTGG TCAGAATTTT GACTCATCAA TAAAGTATAC TAATTCTTTT
  Y
  CATGCCTCGT GGAAACTTTA AAAGTGAGGC AAGTCTCTTG GGGCTGGAGA GATGGCTCAG
  TAGTTAAGAA TACTAGTTTG CTGCTCAACC TTAAGGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45387399	mCV23381729	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss51582623	NES14672119	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		C	C	T	T		C	C	T	C		C
ss135549446	ENSMUSSNP1141257	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320852683	CHEV_3_101514073	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30014996					SNP	T	C	C	C	C	C	T	C	C	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582623	NES14672119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101617466 () rs orientation: forward

Symbol	Name	Function Class
Gm65392	predicted gene, 65392	1862 bp upstream
Rr1547	regulatory region 1547	1597 bp proximal
Rr375471	regulatory region 375471	1532 bp upstream
Rr582111	regulatory region 582111	110 bp distal
Rr582112	regulatory region 582112	1372 bp proximal
Rr582113	regulatory region 582113	1873 bp proximal