rs30014327 SNP Detail

Summary

• ID
  rs30014327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCAGAT GTGAGTCAGA
  TTCCAGAAAC AGCACATCTC TGTGGACCTA AGACTCAAAC TCCAATTCAA GGTAACAGTA
  TAAACTGCAC TCTGAAGCGA TCCTTAGGTT GAATCATACA CACCTAATCA TATGTGGCTG
  AAGTGCACCT CACTATGCAT GTTTGTGTGC ACACATACGT AATTATTCAC CAAACTGCTC
  Y
  AAGGCAAGCT CCTGACAGGT GAGTGTAAAA CGAGAGAGCT GCTTTCACAG TGTACATTCT
  GAGATGGGGT TTCTTTTCTA CCAGACACGC GCTCTAATGA AACAACCGTC ACTTACTTGT
  TATTTTTAAA AAATAAAATC TGAAGTGGGT GGAGTAAAAA AAAATCATAC CACTAGTAAA
  AGAGACATCA GGGCTTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45388188	mCV24236771	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss47026584	NES10845630	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	C	C	C		C	T	C	C		T
ss321010012	CHEV_3_146006987	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30014327					SNP	C	C	T	C	T	C	T	C	C	C	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026584	NES10845630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1262 bp proximal
Rr587007	regulatory region 587007	1531 bp distal
Rr587008	regulatory region 587008	within coordinates
Rr587009	regulatory region 587009	189 bp distal
Rr587010	regulatory region 587010	1068 bp proximal
Rr587011	regulatory region 587011	1374 bp proximal