rs30013696 SNP Detail

Summary

• ID
  rs30013696
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28475079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAA TGGGGAAAAC CCCATCCAAA
  M
  GACAGCAGAG CACACTCAGC TAGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45385473	mCV25182202	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss134713225	ENSMUSSNP1146769	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs30013696					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28475079 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir466q	microRNA 466q			912 bp downstream
Rr574579	regulatory region 574579			271 bp distal
Rr574580	regulatory region 574580			1174 bp proximal
Rr574581	regulatory region 574581			1445 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant