rs30012996 SNP Detail

Summary

• ID
  rs30012996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95289583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGACTCCC GCCGCCACCT CCTTAGGGGC TGGAGATGCG
  ACCCGGTTCA AGGAGGCGCT GCTAGGGCCT CCAGCCGTTA GTAGCAGAAC AGAGCTCTAG
  R
  TGCGCCCGGG GCGCGGCGCC GGCGCCTGAT TCCCAGCTCG CCCGCACAGC CGGAGACTTG
  GGTTCTCTGT AGCTGCACGA CTCGGCTCCC AGGATTCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46363619	mCV23074464	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss136828241	ENSMUSSNP1849353	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30012996					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95289583 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	260 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684785	regulatory region 684785	1946 bp distal
Rr684786	regulatory region 684786	1742 bp distal
Rr684787	regulatory region 684787	1568 bp distal
Rr684788	regulatory region 684788	1545 bp distal
Rr684789	regulatory region 684789	1386 bp distal
Rr684790	regulatory region 684790	165 bp distal
Rr684791	regulatory region 684791	within coordinates
Tssr86547	transcription start site region 86547	91 bp downstream
Tssr90904	transcription start site region 90904	411 bp upstream
Tssr90905	transcription start site region 90905	339 bp upstream
Tssr90906	transcription start site region 90906	318 bp upstream
Tssr90907	transcription start site region 90907	291 bp upstream
Tssr90908	transcription start site region 90908	254 bp upstream
Tssr90909	transcription start site region 90909	231 bp upstream
Tssr90910	transcription start site region 90910	197 bp upstream
Tssr90911	transcription start site region 90911	169 bp upstream
Tssr90912	transcription start site region 90912	237 bp downstream